FastQCFastQC Report
Wed 8 May 2024
EGAF00005310672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005310672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9048206
Total Bases461.4 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTAATCTCGTAT305440.3375696795585777TruSeq Adapter, Index 22 (97% over 40bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTAATCTCGTATG112720.12457718137717022TruSeq Adapter, Index 22 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)