EGAF00005310674 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005310674
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7265210
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGCCG	1018742	14.022196192539512	TruSeq Adapter, Index 8 (100% over 51bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAAACTCGTATGCCG	56559	0.7784909176747815	TruSeq Adapter, Index 8 (98% over 51bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAAGCTCGTATGCCG	41617	0.5728258371058785	TruSeq Adapter, Index 8 (98% over 51bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAACCTCGTATGCCG	34334	0.4725809715066736	TruSeq Adapter, Index 8 (98% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGCC	13572	0.18680808951152136	TruSeq Adapter, Index 8 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	127810	44.405445	1
TCGGAAG	127660	44.327446	2
CGGAAGA	127475	44.28204	3
TATGCCG	125410	44.059177	45
ACACGTC	127345	43.92265	12
GCACACG	127885	43.87411	10
ACGTCTG	127270	43.843628	14
CACGTCT	127595	43.827774	13
CACACGT	127785	43.808384	11
CGTCTGA	127290	43.79785	15
AGAGCAC	128670	43.784798	7
GAAGAGC	128810	43.745037	5
GAGCACA	128725	43.704914	8
AGCACAC	129150	43.54367	9
AAGAGCA	129680	43.411655	6
CTCGTAT	126295	43.362045	41
TCTCGTA	110810	43.35027	40
TCGTATG	126815	43.342155	42
CGTATGC	127570	43.339626	43
ATCTCGT	110845	43.296818	39