FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005310675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005310675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13485365
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCGTA654.2469005E-420.76530327
CGTTGGA31600.012.9158931
TATGCCG4950.012.27027145
CTCGTAT5250.011.99759841
AAACGGG33900.011.8781527
GAAACGG34350.011.8535216
ACGGGAT18500.011.7949349
CGTATGC5550.011.75440443
AACGGGA27250.011.3922148
GGAAACG35550.011.1370115
AACGGGT8450.010.3825368
ATCGGAA6900.010.1871231
TCTCGTA5600.010.04263240
CGGGATT18700.09.74403810
TCGTATG7000.09.64092642
TCGGAAG8050.09.5058192
ACGGGTT7400.09.4237899
ACACGTC7850.08.88357212
CGTCTGA8150.08.55656815
CGGGAAT11850.08.54259310
Produced by FastQC (version 0.11.5)