EGAF00005310688 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005310688
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9745683
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCC	114319	1.1730219421255543	TruSeq Adapter, Index 1 (100% over 51bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCG	10632	0.10909445751518902	TruSeq Adapter, Index 1 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	12670	44.15243	1
TCGGAAG	14230	39.360115	3
ATCGGAA	14230	39.359512	2
ACACGTC	14250	38.876854	13
TCTCGTA	14105	38.83796	41
CTCGTAT	14140	38.80235	42
CGTCTGA	14285	38.799328	16
ATCTCGT	14160	38.703808	40
CGGAAGA	14450	38.65194	4
TCGTATG	14305	38.4654	43
TCACGAT	14300	38.42113	35
CGTATGC	14325	38.406693	44
ACGTCTG	14520	38.14021	15
CACGTCT	14585	37.9839	14
ACGATCT	14430	37.9484	37
CATCACG	14505	37.878124	33
CACGATC	14510	37.756443	36
GCACACG	14735	37.65846	11
CACACGT	14900	37.22615	12
GTATGCC	15000	36.726723	45