FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005310697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005310697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9367167
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC9700.031.77919245
GATCGGA7500.031.2416881
CTCGTAT14700.020.66370243
TCTCGTA14450.020.24264142
TCGTATG15250.019.7709144
ATCGGAA15550.019.704751
ACACGTC16250.019.24450712
TATCTCG14900.019.17815440
AGTCACG16350.018.71459227
ATCTCGT15550.018.6658941
TCGGAAG16300.018.637552
GTCACGT17250.017.99970628
CGTCTGA17450.017.40538415
ACGTCTG18650.016.52673314
CGGAAGA19200.016.5258163
CGTGGCC19000.015.98632732
ACGTGGC19350.015.81344231
TCACGTG19850.015.52863229
GCACACG20700.015.4334610
CACGTCT20800.015.0347713
Produced by FastQC (version 0.11.5)