EGAF00005310728 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005310728
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4540390
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGCC	428980	9.448087058600693	TruSeq Adapter, Index 11 (100% over 51bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGCCG	49810	1.0970423245580225	TruSeq Adapter, Index 11 (100% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACAGCTCGTATGCC	10642	0.2343851519362874	TruSeq Adapter, Index 11 (98% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACACCTCGTATGCC	10028	0.22086208453458844	TruSeq Adapter, Index 11 (98% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACAACTCGTATGCC	8325	0.18335429335365463	TruSeq Adapter, Index 11 (98% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	49335	44.822327	1
TATGCCG	7415	41.540123	45
ATCGGAA	55490	39.871605	2
TCGGAAG	55435	39.854324	3
CGGAAGA	55600	39.67534	4
ACACGTC	54970	39.550083	13
CACGTCT	55000	39.487602	14
ACGTCTG	54875	39.43815	15
CACACGT	55280	39.4219	12
GCACACG	55460	39.405376	11
CGTCTGA	54910	39.39662	16
AGAGCAC	56065	39.20487	8
GAGCACA	56230	39.097828	9
AGCACAC	56065	39.06442	10
TCTCGTA	51320	39.019676	41
GAAGAGC	56430	39.01108	6
AGTCACG	55405	38.944412	28
ATCTCGT	51530	38.91828	40
CGTATGC	55310	38.889263	44
CTCGTAT	55005	38.876266	42