FastQCFastQC Report
Fri 27 May 2022
EGAF00005310945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005310945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387080544
Sequences flagged as poor quality0
Sequence length75
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA4596820.11875616254171638TruSeq Adapter, Index 11 (100% over 63bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAA4503950.11635692027962014TruSeq Adapter, Index 11 (100% over 62bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4272850.11038658662213723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)