Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005312248 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39069877 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGGCTAACATCTCGTAT | 972280 | 2.488566831167654 | TruSeq Adapter, Index 13 (97% over 37bp) |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGGCTAACATCTCGTA | 684962 | 1.7531716314335977 | TruSeq Adapter, Index 13 (97% over 37bp) |
ACACTCTTTCCCTAGACGTGTGCTCTTCCGATCAGATCGGAAGAGCACAC | 76107 | 0.19479713232780335 | Illumina Multiplexing PCR Primer 2.01 (95% over 21bp) |
ACACTCTTTCCCTACACGACGCTCTTCCGATCTAGATCGGAAGAGCACAC | 46258 | 0.11839812037288983 | Illumina Single End PCR Primer 1 (100% over 33bp) |