FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005312274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63726785
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG4259940.6684693100397266No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACCACTGTATCTCGTAT4123390.6470418992579022TruSeq Adapter, Index 1 (97% over 38bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACCACTGTATCTCGTA3851830.6044287343226243TruSeq Adapter, Index 1 (97% over 38bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA2125220.3334892855492396No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT2120290.3327156704986765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)