FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005312302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39359935
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCCTGTAATCTCGTAT2502080.6356921067069852TruSeq Adapter, Index 18 (97% over 37bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCCTGTAATCTCGTA2393860.6081971426019885TruSeq Adapter, Index 18 (97% over 37bp)
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG1614200.4101124658869483No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA796630.20239616757497186No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT724360.18403485676488032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)