FastQCFastQC Report
Thu 25 Aug 2022
EGAF00005312306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40625213
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG4827581.188321154156164No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGACTAGTAATCTCGTA3848580.9473378022657998TruSeq Adapter, Index 11 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGACTAGTAATCTCGTAT3483680.8575167347430277TruSeq Adapter, Index 11 (97% over 38bp)
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT2688720.6618352991773853No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA2439670.6005310052158987No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT495260.1219095146651908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)