FastQCFastQC Report
Sat 27 Aug 2022
EGAF00005312330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61343450
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG3417760.5571515785303891No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATAGACAATCTCGTAT2774400.4522732255848016TruSeq Adapter, Index 9 (97% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATAGACAATCTCGTA2641880.4306702671597375TruSeq Adapter, Index 9 (97% over 36bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA1568020.25561327248467436No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1496400.2439380243530483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)