FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005312334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46345444
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG1362710.2940332171593825No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTAACGAATCTCGTA1357580.29292631223901966TruSeq Adapter, Index 6 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTAACGAATCTCGTAT1148370.24778487395654253TruSeq Adapter, Index 6 (97% over 38bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA680660.14686664777664013No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT573810.12381152287590556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)