FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005312338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47550734
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG1371790.2884897633756821No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGAGAACAATCTCGTAT1317210.27701149681517007TruSeq Adapter, Index 2 (97% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGAGAACAATCTCGTA1275940.2683323458266701TruSeq Adapter, Index 2 (97% over 36bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA801070.16846637950951504No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT591130.12431564147884658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)