FastQCFastQC Report
Mon 5 Sep 2022
EGAF00005312350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50341502
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG2095160.41618940968428No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTGGAACAAATCTCGTA1778780.3533426555290305TruSeq Adapter, Index 10 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGGAACAAATCTCGTAT1624940.32278337662630724TruSeq Adapter, Index 10 (97% over 36bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA1344830.26714141346040887No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT950630.18883624092105952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)