FastQCFastQC Report
Thu 25 Aug 2022
EGAF00005312370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54009132
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG754470.1396930430209469No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCACCTCATCTCGTAT753550.13952270145722764TruSeq Adapter, Index 1 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)