FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005312390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59179172
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG1856200.31365764968796794No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGACAACATCTCGTA1275780.21557922439333893TruSeq Adapter, Index 16 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGACAACATCTCGTAT1256020.21224021180965494TruSeq Adapter, Index 16 (97% over 38bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA1093320.18474743107254019No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT725130.12253128516228648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)