FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005312402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39166404
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG1057680.27004776849056655No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGAACAGGCATCTCGTA982590.25087572502188354TruSeq Adapter, Index 9 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAACAGGCATCTCGTAT954460.24369354919588737TruSeq Adapter, Index 9 (97% over 39bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA621920.1587891500072358No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT419610.10713518657469805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)