FastQCFastQC Report
Sat 27 Aug 2022
EGAF00005312408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50974093
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG881460.17292313567992273No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAAGACATCTCGTAT812970.15948689857022075TruSeq Adapter, Index 6 (97% over 40bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAAGACATCTCGTA752930.14770836628716474TruSeq Adapter, Index 6 (97% over 40bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA612060.12007275931324565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)