FastQCFastQC Report
Sat 27 Aug 2022
EGAF00005312476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50104072
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTGCGAAATCTCGTAT814880.1626374798439536TruSeq Adapter, Index 9 (97% over 36bp)
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG653760.1304804128494786No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTGCGAAATCTCGTA597010.11915398812296135TruSeq Adapter, Index 9 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)