FastQCFastQC Report
Sat 27 Aug 2022
EGAF00005312490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54518169
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAACCGAGAATCTCGTAT2863840.5253001068322746TruSeq Adapter, Index 1 (97% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAACCGAGAATCTCGTA2441820.4478910507797868TruSeq Adapter, Index 1 (97% over 36bp)
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG779810.14303671863961537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)