FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005312498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46589882
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG1144750.24570785562410313No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGTATCAATCTCGTAT987250.21190223233447983TruSeq Adapter, Index 8 (97% over 37bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACGTATCAATCTCGTA932340.200116411541888TruSeq Adapter, Index 8 (97% over 37bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA730990.15689887345067757No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT519930.11159719185380207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)