FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005312518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47985176
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG2299290.47916673265926957No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAACTTAATCTCGTAT1866850.38904723408746067TruSeq Adapter, Index 22 (97% over 38bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAACTTAATCTCGTA1666370.3472676644970522TruSeq Adapter, Index 22 (97% over 38bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA1175320.24493397710993076No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1043510.2174650771313207No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT563950.11752587924237269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)