FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005312532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56184717
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG1394390.24817958947804258No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA794350.14138186368367756No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGAAGAGAATCTCGTAT738870.1315072922766524TruSeq Adapter, Index 2 (97% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTGAAGAGAATCTCGTA629280.11200198801392912TruSeq Adapter, Index 2 (97% over 36bp)
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT564100.10040096846977088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)