FastQCFastQC Report
Sat 27 Aug 2022
EGAF00005312534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49506807
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG2573100.5197467087707757No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTCACGCAATCTCGTAT2011560.40631988243556083TruSeq Adapter, Index 1 (97% over 39bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTCACGCAATCTCGTA1781900.35993030210976845TruSeq Adapter, Index 1 (97% over 39bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA1262140.2549427192911068No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1150860.2324650022369651No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)