FastQCFastQC Report
Sat 27 Aug 2022
EGAF00005312536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40917153
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAACTCACCATCTCGTAT753150.18406705862453332TruSeq Adapter, Index 1 (97% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAACTCACCATCTCGTA577150.14105331326448836TruSeq Adapter, Index 1 (97% over 36bp)
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG429590.10499019812057794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)