FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005312619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32791796
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1507620.45975523877984603No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC1347890.41104488451928645No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG1315320.4011125221686547No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1000240.30502751358906965No Hit
AGCAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTC975290.2974189031915178No Hit
ATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGCTCCCG945220.28824892665226387No Hit
GCAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCG862340.2629743122334623No Hit
AAGCCCTCCAGCAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCT547170.16686185776466772No Hit
CCAGCAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTG394220.12021909382456514No Hit
CCTCCAGCAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTC393550.12001477442711585No Hit
GCGAGAATGAAGACTATTCTCAGCAATCAGACTGTCGACATTCCAGAAAA392390.11966102741063649No Hit
CTCCAGCAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCC369130.1125677898215761No Hit
AGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGCTC348060.10614240220328279No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG346260.10559348441909068No Hit
GCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGA344950.10519399425392864No Hit
CAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGCTCCCGGTC341830.10424253676132897No Hit
AGGAGGTCCCCCACGGCCCTTCAGGATGAAAGCTGCGGTGCTGACCTTGG328780.10026288282593611No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)