FastQCFastQC Report
Thu 25 Aug 2022
EGAF00005312665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40154620
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1720320.42842392730898715No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1147980.2858898926200771No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG971510.24194227214701572No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA461630.1149631100979165No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA447450.11143176052967256No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG412260.10266813631905868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)