FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005312667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39091244
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1395370.3569520581130649No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG635050.16245325935393615No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG569950.14579991365841416No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA489660.1252607873006037No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG455450.11650946692819497No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG443920.11355995731422616No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA411230.10519747081980814No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG399390.1021686595596702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)