FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005312765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28011363
Sequences flagged as poor quality0
Sequence length120
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2060870.7357264264505801No Hit
GCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAAC570530.20367805736550554No Hit
GCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG523750.1869776918745439No Hit
CCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATT515970.18420024759237885No Hit
CTGCCTGATTTTATACCGACCGCCGGAAGGGATCACATTATGGTCAGTGC488800.1745006124835839No Hit
GACGGCTTACAATAAACGTGATCAAAAACTGCCTGATTTTATACCGACCG367290.1311217879686897No Hit
TCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGC307370.10973046902430274No Hit
CCGCCGGAAGGGATCACATTATGGTCAGTGCGAAATTTGAGGACGACGCT299250.10683164542903535No Hit
GCTCCCATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG286500.10227992118769802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)