FastQCFastQC Report
Wed 11 May 2022
EGAF00005312777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26408782
Sequences flagged as poor quality0
Sequence length120
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3005571.1380948958569919No Hit
GCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG968540.3667492124400133No Hit
GCTCCGATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG935710.3543177417269755No Hit
GCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAAC819560.31033616014551524No Hit
GCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAA670040.2537186304162002No Hit
CCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATT643260.24357806429694487No Hit
GCTCCTATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG523920.19838855120239926No Hit
GCTCCCATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG507810.1922883077303603No Hit
TCCCCGTCCTGATTTACTGGACTCGCAACGTGGGTCCATCAGTTGTCCGT500350.1894634898345558No Hit
CGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG412330.1561336679593932No Hit
GTAACTTTTTTGTGTATGTACTTAGCTGTACTATAAGTAGTTGGTTTGTA383460.14520169843501302No Hit
CTGCCTGATTTTATACCGACCGCCGGAAGGGATCACATTATGGTCAGTGC340160.1288056374580244No Hit
AGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG328350.12433364022619445No Hit
GCCCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG325640.12330746643294643No Hit
TCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAA316990.12003204085671197No Hit
TGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG305040.11550703095659619No Hit
ACCGCCTGACGAGTGCTGACAGCTATGAAGAAGACCTCCTGTTTGCCACG286210.10837682707214592No Hit
GCTTCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG284980.10791107291506288No Hit
TCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACA284190.10761193000116401No Hit
TCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGC282140.10683567307269226No Hit
GTTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG268570.1016972308681256No Hit
CCCCCGATTCCGCTACGACCAACTCATGCACCTCCTATGAAAAAACTTCC267480.10128448937932844No Hit
CCGCCGGAAGGGATCACATTATGGTCAGTGCGAAATTTGAGGACGACGCT266680.10098155984626629No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)