FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005312785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005312785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16900711
Sequences flagged as poor quality0
Sequence length75-120
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1506990.891672545610655No Hit
GCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG996290.5894959093732802No Hit
GCTCCTATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG350180.20719838354729572No Hit
GCTCCCATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG336280.19897387748953285No Hit
GCTCCGATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG335300.19839402022790636No Hit
CGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG293010.17337140431547524No Hit
GCTTCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG243960.1443489566799882No Hit
GCTCTAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG232480.13755634304379266No Hit
GTAACTTTTTTGTGTATGTACTTAGCTGTACTATAAGTAGTTGGTTTGTA225220.1332606657790906No Hit
CTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGA214210.12674614695204245No Hit
TGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG200410.11858081000260877No Hit
GCCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG194200.11490640837536362No Hit
GCCCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG177830.10522042534186875No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)