EGAF00005312789 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005312789
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	34758302
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	246617	0.709519699782803	No Hit
GTAACTTTTTTGTGTATGTACTTAGCTGTACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCCAAAGAT	77996	0.22439531137050367	No Hit
CCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACAG	48067	0.13828926395771576	No Hit
CTCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAAC	41712	0.12000586219660558	No Hit
CCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACA	39732	0.1143093813961338	No Hit
TCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACA	39163	0.11267236241862448	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATAGCG	5570	56.150593	6
CGATAGC	4940	55.0031	5
TATAGCG	2800	52.09363	6
CCGATAG	4315	51.860664	4
CGATTGG	3725	42.95163	5
CTACGGA	7915	37.874107	29
CCCGTAC	8440	36.439796	3
AGAACGT	8240	36.22847	48
CGGAAAC	8565	35.240475	32
CAAAGAT	37390	35.12143	69
GCTACGG	9000	33.84756	28
GCTCCGA	3465	33.835625	1
CGTACTA	6790	33.77068	5
CCCCCGT	15260	33.7142	1
CATAGCG	4645	33.25788	6
CCCCGTA	11295	32.93693	2
TACTTAG	40895	32.49202	19
GTACTTA	40870	32.41847	18
CGGTCCG	47570	32.299442	69
ACTTAGC	41310	32.191113	20