FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005314402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005314402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5229594
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACGGCG851.6353584E-533.5232626
CGCCGTA2350.030.31300758-59
CGGCGTA650.00585036629.2262488
ACGGCGT1806.722985E-926.3843027
TCGCCGT3400.021.64930256-57
GTACGGC1605.0006944E-520.777445
GTCGCCG3650.019.51594256-57
GCCGTAT4050.017.58903158-59
ATACGGC3101.121025E-716.8517485
TGATACG4802.1827873E-1115.830433
TGGTCGC4650.015.8288454-55
GGTCGCC4550.015.65489754-55
CGTTGGA18800.015.1414991
CGGCATA2851.586004E-514.997688
GAGCGTC9600.014.3479749
AGTACGT5150.013.83426736-37
CAGTACG5000.013.77510734-35
CGTCGTG5900.013.6868112-13
GATCGGA10650.013.13781451
TGGTACG4757.417475E-812.9976163
Produced by FastQC (version 0.11.5)