FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005314507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005314507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4064580
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4200.023.18162748-49
CTCGTAT4400.022.66720444-45
CGGAAGA10750.019.8817254
GTCACGA5550.019.68561628-29
CGTATGC5000.019.47208646-47
TCTCGTA4700.019.20067442-43
TCGTATG5350.019.08604644-45
ATGCCGT5600.019.08243848-49
GATCGGA10550.018.9924051
ATCGGAA10950.018.6736092
TCGGAAG11150.018.3192523
GCCGTCT5950.017.1617250-51
TGCCGTC5900.016.50217650-51
CGTTGGA15500.015.3893911
ACGAGAT6650.015.35796332-33
ATCTCGT6450.014.72756642-43
AGTCACG7100.014.38448228-29
ACACGTC8150.013.69359712-13
CGTCTGA7500.013.29743916-17
AAACGGG18100.013.1189387
Produced by FastQC (version 0.11.5)