FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005314517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005314517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4698781
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGAG500.001655125823.7485286-87
TATGCCG4400.023.20742648-49
CGACGCT1100.00287713621.59293
ACGACGC1150.003696196220.679832
CGGCTAT5100.020.0240134-35
GATCGGA10400.019.2877251
CGTATGC5300.018.37003146-47
CTCGTAT5350.018.19834944-45
CGTTGGA17650.017.8592931
TCTCGTA4950.017.7507642-43
ATCGGAA11400.017.5234342
TCGGAAG12700.017.2063083
TGCCGTC6050.016.87794750-51
TCACCGG6550.015.59245830-31
TCGTATG5950.015.56501644-45
CGGAAGA13200.015.4724394
GTCACCG6700.015.24329228-29
ATGCCGT6300.015.07754448-49
ACCGGCT6500.014.98151132-33
CACGACG1950.0043051214.6954111
Produced by FastQC (version 0.11.5)