FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005314669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005314669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31784145
Sequences flagged as poor quality0
Sequence length35-150
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT696160.2190274427706015No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT360640.1134653771558115No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC333940.10506496242072895No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)