FastQCFastQC Report
Sat 2 Jul 2022
EGAF00005314673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005314673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52063530
Sequences flagged as poor quality0
Sequence length125-150
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1255790.2412033913182606No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT710430.1364544432542319No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC647800.12442490933672763No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT615590.11823823701543096No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG571380.10974668832482162No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)