FastQCFastQC Report
Mon 30 May 2022
EGAF00005315887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005315887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470921741
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT26432800.5612992074621588No Hit
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA19413500.41224471732342466No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC8165030.17338401031690742TruSeq Adapter, Index 5 (100% over 50bp)
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7177340.15241046176290254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)