FastQCFastQC Report
Mon 30 May 2022
EGAF00005315897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005315897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428480189
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCATATGAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16011450.37368005361853496No Hit
AGCCATATGAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10212230.23833610659651758No Hit
AGCCATATGAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5363170.12516728048773335No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATG5037400.1175643618846518TruSeq Adapter, Index 18 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)