FastQCFastQC Report
Tue 5 Jul 2022
EGAF00005315906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005315906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430325808
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTAATTGAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT19294660.448373293939182No Hit
TCTTAATTGAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14373350.33401087577810346No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT5979470.1389521587791918Illumina Single End PCR Primer 1 (100% over 50bp)
TCTTAATTGAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4789060.11128916534794492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)