FastQCFastQC Report
Mon 30 May 2022
EGAF00005315917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005315917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466097923
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCACATTGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT23262840.4990976971163203No Hit
CTGCACATTGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15880930.34072089181997917No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC8712640.18692724361271182TruSeq Adapter, Index 6 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)