FastQCFastQC Report
Mon 30 May 2022
EGAF00005315943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005315943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470007732
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT25583990.5443312579376886No Hit
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18835410.40074681154394287No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC8455570.17990278508865043TruSeq Adapter, Index 5 (100% over 50bp)
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7077910.1505913523992835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)