FastQCFastQC Report
Mon 30 May 2022
EGAF00005315953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005315953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472751213
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGCGAACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT23317440.49322855994448817No Hit
CATCAGCGAACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15516830.3282240124045964No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCCTTTATCTCGTATG7883310.16675388202547034TruSeq Adapter, Index 27 (97% over 43bp)
CATCAGCGAACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6875500.14543590393706723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)