FastQCFastQC Report
Mon 30 May 2022
EGAF00005315955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005315955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452570929
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCATATGAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16899490.3734108604222787No Hit
AGCCATATGAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11125210.24582246200793864No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATG5846340.12918063502041688TruSeq Adapter, Index 18 (97% over 39bp)
AGCCATATGAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5745060.12694275376225062No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)