EGAF00005316115 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005316115
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	332551337
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	151065	0.0	8.771309	9
GAGCGTC	184020	0.0	7.3256054	8
CGCCGTA	43330	0.0	6.995998	55-59
AGAGCGT	208640	0.0	6.5879564	7
ATCGGAA	224820	0.0	6.577669	1
TCGGAAG	231845	0.0	6.3822584	2
AGCGGCG	48145	0.0	6.330319	9
AAGAGCG	249370	0.0	6.158643	6
CGGAAGA	251230	0.0	5.964409	3
TCGCCGT	51980	0.0	5.7620683	55-59
ATCGGGA	42065	0.0	5.6505184	1
GCCGTAT	60170	0.0	5.411455	55-59
CTCGGTG	123200	0.0	5.183218	9
ATATCGG	32165	0.0	5.1270723	7
GATATCG	32595	0.0	5.059401	6
GTCGCCG	66120	0.0	5.0385027	55-59
GATGTCG	35195	0.0	5.03655	6