EGAF00005316377 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005316377
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	41313
Sequences flagged as poor quality	0
Sequence length	35-251
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	148	0.3582407474644785	No Hit
GTGCCTGTAAGTCCAGAAATGGTGTGTGGTTAGGAGTCAGGAGCAGAGAA	89	0.21542855759688234	No Hit
GTATATACTCACACACACACACAAATCAAGGAGCACTTTGTACGTGTGTG	83	0.20090528405102512	No Hit
AGTATATACAACATACAAAGGAGTAAGAGAGGCCAGGAAACATGCCAGGA	68	0.16459710018638202	No Hit
TTGTTTACCTGTCCCTTTTGCAAGCATAAGAGGACTTGTGAAGATGTACT	64	0.15491491782247718	No Hit
CCCTAGTACCTGCCAGCACATACCTTTACTTCCTTACATACACACACGTA	59	0.14281218986759617	No Hit
CTCAGAAACATTGTTTACCTGTCCCTTTTGCAAGCATAAGAGGACTTGTG	56	0.13555055309466754	No Hit
CTCTAACATCCTGTATCCCTAGTACCTGCCAGCACATACCTTTACTTCCT	56	0.13555055309466754	No Hit
CACGTACAAAGTGCTCCTTGATTTGTGTGTGTGTGTGAGTATATACAACA	55	0.13313000750369133	No Hit
GGTTAAGCCAGTGGATGGTGACACCATCGAATAAATAACCTACAGCCAGC	52	0.1258683707307627	No Hit
AGTTAACAGTGACCAGGAGGACAACCTGCTTATTGATTCACTCAGAACTA	51	0.1234478251397865	No Hit
ATATAATATATGGTACTAAGTGCTATGGGGAAAAATAAAACCAGAAACAG	50	0.1210272795488103	No Hit
CTCTTACTCCTTTGTATGTTGTATATACTCACACACACACACAAATCAAG	47	0.11376564277588168	No Hit
CTCCCTGCTGAGGAACCAGAGATGTCTCAAGGATTGGTCAAATTTGGGGG	46	0.11134509718490548	No Hit
ATACAAAGGAGTAAGAGAGGCCAGGAAACATGCCAGGAGCTTTGGGAATG	46	0.11134509718490548	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTTCAA	30	0.008565035	135.7419	225-229
CAATGAC	30	9.361508E-4	86.90792	2
CTCAGCT	30	9.361508E-4	86.90792	9
CACTTGG	40	0.0029317546	65.18095	1
ATACTCA	150	0.0030532437	64.202255	245
AGGTGGT	130	2.1827873E-11	60.167027	2
CACATGC	45	0.004674679	57.938614	3
TGACTAA	45	0.004674679	57.938614	5
TAATCAA	50	0.007092446	52.144756	9
GTTATAG	50	0.007092446	52.144756	2
CCACATT	65	0.008020465	50.524284	240-244
GGTGGTG	155	1.1823431E-10	50.46267	3
TGGTGAG	165	2.2009772E-10	47.404324	5
ACATTGT	80	8.260549E-4	43.453964	8
GTGGTGA	195	1.1295924E-9	40.11135	4
GAGGTGG	250	7.2759576E-12	38.239487	1
AACATTG	95	0.0019230165	36.59281	7
TCAGAAA	100	0.0024734358	34.763172	2
GGTTGGA	100	0.0024734358	34.763172	8
TTGTAGA	80	0.0026626508	34.26178	225-229