FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005316380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005316380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61113
Sequences flagged as poor quality0
Sequence length35-251
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2250.3681704383682686No Hit
CTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATT700.1145419141590169No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCAT680.11126928804018786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)