FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005316381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005316381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61113
Sequences flagged as poor quality0
Sequence length35-251
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2270.3714430644870977No Hit
GTATAGGGATAAGGGGTGTAGGTGTGCCTTGTGGTAAGAAGTGGGCTAGG800.13090504475316217No Hit
ATCCTATATATCTTAATGGCACATGCAGCGCAAGTAGGTCTACAAGACGC630.10308772274311521No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)