EGAF00005316388 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005316388
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	51188
Sequences flagged as poor quality	0
Sequence length	35-251
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	199	0.38876299132609204	No Hit
CTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGC	77	0.15042588106587482	No Hit
ATTCCTAGCCATGCACTACTCACCAGACGCCTCAACCGCCTTTTCATCAA	63	0.1230757208720794	No Hit
CATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGC	63	0.1230757208720794	No Hit
CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA	62	0.121122138001094	No Hit
ATATACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCC	60	0.11721497225912322	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	58	0.11330780651715247	No Hit
CATAAATAGTATGGCTTTGAAGAAGGCGTGGGTACAGATGTGCAGGAATG	56	0.10940064077518169	No Hit
GTTGTAGTCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT	52	0.10158630929124014	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAAATGT	35	0.0038958904	176.54045	245
CGGGGAT	40	0.0058084624	154.4729	245
ATCGAAG	45	0.004741831	57.75065	8
TATTATA	85	1.8409095E-5	50.956455	2
GTGTATG	105	6.413968E-5	41.25047	1
ATTTAGG	90	0.0015016703	38.500435	1
CTCTAAC	95	0.0019584224	36.4741	1
ATTATAC	145	1.0138303E-5	35.845234	3
CTAACAC	125	1.7903022E-4	34.650394	3
CTATGCT	110	0.004018211	31.500357	9
AAAAAAA	400	6.834891E-4	30.894583	245
TTATACC	115	0.004994433	30.130774	4
GTATGGG	120	0.0061493744	28.875326	9
TGTATGA	130	0.0090886215	26.654146	2
CTGAGGG	190	0.0020716046	22.79631	9
ACTATGC	195	0.0024091576	22.21179	8
CACTATG	200	0.0027906788	21.656496	7
TCTGAGG	270	6.944634E-4	19.250217	8
AGAATAG	330	0.0026649015	15.750177	5
GGCTAGG	485	0.0023328352	12.502719	1